Dr. Wang Research Group

Dr. Wang Research Group

Publications

A full list of publications can also be found at my GoogleScholar profile.

(‡ indicates (co-) first author, § indicates (co-)corresponding author )

2017-Now

  1. Xu Y‡, Yang L‡, Tang Y, Wang Y§, Wang HW§. riboCIRC v2.0: an expanded resource for translatable CircRNAs. Nucleic Acids Research. 2025 Oct 21:gkaf1022.(IF=13.1, JCR Q1)

  2. Wang Y‡, Tang YW‡, Xie Z§, Wang HW§. RPFdb v3.0: An Enhanced Repository for Ribosome Profiling Data and Related Content. Nucleic Acids Research. 2025 Jan 6;53(D1):D293–D298.(IF=16.6, JCR Q1)

  3. Chen JJ, Li YC, Wang Y, Wang H, Yang JQ, Pan X, Zhao Y, Xu H, Jiang PL, Qian PX, Wang HW, Xie Z, Lei K§. Fibrillarin homologs regulate translation in divergent cell lineages during planarian homeostasis and regeneration. EMBO Journal. 2024 Dec;43(24):6591-6625.(IF=9.6, JCR Q1)

  4. Yang LD‡, Yi L‡, Yang JQ, Zhang R, Xie Z§, Wang HW§. Temporal landscape and translational regulation of A-to-I RNA editing in mouse retina development. BMC Biology. 2024 May 7;22(1):106. (IF=4.4, JCR Q1)

  5. Zheng XT, Wang MW, Liu ST, Chen HQ, Li YF, Yuan F, Yang LD, Qiu S, Wang HW, Xie Z, Xiang MQ§. A lncRNA-encoded mitochondrial micropeptide exacerbates microglia-mediated neuroinflammation in retinal ischemia/reperfusion injury. Cell Death & Disease. 2023 Feb 15;14(2):126. (IF=8.1, JCR Q1)

  6. Yang Y‡, Wang HW‡, Zhang YL, Chen L, Chen GN, Bao ZS, Yang Y, Xie Z, Zhao Q§. An optimized proteomics approach reveals novel alternative proteins in mouse liver development. Molecular & Cellular Proteomics. 2023 Jan;22(1):100480. (IF=6.1, JCR Q1)

  7. Luan YZ‡, Tang N‡, Yang JQ‡, Liu ST, Cheng CC, Wang Y, Chen CY, Guo YN, Wang HW, Zhao WX, Zhao Q, Li W, Xiang MQ, Ju R§, Xie Z§. Deficiency of ribosomal proteins reshapes the transcriptional and translational landscape in human cells. Nucleic Acids Research. 2022 Jul 8;50(12):6601-6617. (IF=16.6, JCR Q1)

  8. Chen L, Yang Y, Zhang YL, Li KC, Cai HM, Wang HW, Zhao Q§. The Small Open Reading Frame‐Encoded Peptides: Advances in Methodologies and Functional Studies. ChemBioChem. 2022 Apr 20;23(8):e202100534. (IF=2.6, JCR Q3)

  9. Xie MZ‡, Yang LD‡, Chen GN‡, Wang Y, Xie Z§, Wang HW§. RiboChat: a chat-style web interface for analysis and annotation of ribosome profiling data. Briefings in Bioinformatics. 2022 Mar 10;23(2):bbab559. (IF=6.8, JCR Q1)

  10. Chen KN‡, Chen CY‡, Li HH, Yang JQ, Xiang MQ, Wang HW§, Xie Z§. Widespread translational control regulates retinal development in mouse. Nucleic Acids Research. 2021 Sep 27;49(17):9648-9664. (IF=16.6, JCR Q1)

  11. Chen L, Zhang YL, Yang Y, Yang Y, Li HH, Dong X, Wang HW, Xie Z, Zhao Q§. An integrated approach for discovering noncanonical MHC-I peptides encoded by small open reading frames. J Am Soc Mass Spectrom. 2021 Sep 1;32(9):2346-2357. (IF=3.1, JCR Q2)

  12. Li HH‡, Xie MZ‡, Yan Wang‡, Yang LD, Xie Z§, Wang HW§. riboCIRC: a comprehensive database of translatable circRNAs. Genome Biology. 2021 Mar 8;22(1):79. (IF=10.1, JCR Q1)

  13. Wang HW‡,§, Yan Wang‡, Yang JQ‡, Zhao Q‡, Tang N, Chen CY, Li HH, Cheng CC, Xie MZ, Xie Z§. Tissue-and stage-specific landscape of the mouse translatome. Nucleic Acids Research. 2021 Jun 21;49(11):6165-6180. (IF=16.6, JCR Q1)

  14. Wang HW‡,§, Yan Wang‡, Xie Z§. Computational resources for ribosome profiling: from database to Web server and software. Briefings in Bioinformatics . 2019 Jan 18;20(1):144-155. (IF=6.8, JCR Q1)

  15. Wang HW‡,§, Yang LD‡, Yan Wang‡, Chen LS‡, Li HH, Xie Z§. RPFdb v2. 0: an updated database for genome-wide information of translated mRNA generated from ribosome profiling. Nucleic Acids Research. 2019 Jan 8;47(D1):D230-D234. (IF=16.6, JCR Q1)

  16. Yu Q‡, Lin BY‡, Xie SQ‡, Gao S, Li W, Liu YZ, Wang HW, Huang DP§, Xie Z§. A homozygous mutation p.Arg2167Trp in FREM2 causes isolated cryptophthalmos. Human Molecular Genetics. 2018 Jul 1;27(13):2357-2366. (IF=3.1, JCR Q2)

  17. Hu YF‡, Huang Y‡, Yi Y‡, Wang HW, Liu B§, Yu J§, Wang D§. Single-cell RNA sequencing highlights transcription activity of autophagy-related genes during hematopoietic stem cell formation in mouse embryos. Autophagy. 2017 Apr 3;13(4):770-771. (IF=14.6, JCR Q1)

  18. Wang HW‡,§, Wang Y‡, Xie SQ, Liu YZ, Xie Z§. Global and cell-type specific properties of lincRNAs with ribosome occupancy. Nucleic Acids Research. 2017 Mar 17;45(5):2786-2796. (IF=16.6, JCR Q1)

Before 2017

  1. Gu YY‡,§, Li PF‡, Peng FD‡, Zhang MM, Zhang YY, Liang HH, Zhao WY, Qi LS, Wang HW, Wang CG, Guo Z§. Autophagy-related prognostic signature for breast cancer. Molecular Carcinogenesis. 2016 Mar;55(3):292-9. (IF=4.6, JCR Q2)

  2. Qi LS, Chen LB, Li Y, Qin Y, Pan RF, Zhao WY, Gu YY, Wang HW, Wang RP, Chen XQ, Guo Z§. Critical limitations of prognostic signatures based on risk scores summarized from gene expression levels: a case study for resected stage I non-small-cell lung cancer. Briefings in Bioinformatics. 2016 Mar;17(2):233-42. (IF=9.5, JCR Q1)

  3. Peng FD, Zhang Y, Wang R, Zhou W, Zhao Z, Liang HH, Qi LS, Zhao WY, Wang HW, Wang CG, Guo Z§, Gu YY§. Identification of differentially expressed miRNAs in individual breast cancer patient and application in personalized medicine. Oncogenesis. 2016 Feb 15;5(2):e194. (IF=6.2, JCR Q1)

  4. Wang HW, Cai H, Ao L, Yan HD, Zhao WY, Qi LS, Gu YY, Guo Z§. Individualized identification of disease-associated pathways with disrupted coordination of gene expression. Briefings in Bioinformatics. 2016 Jan;17(1):78-87. (IF=9.5, JCR Q1)

  5. Xie SQ‡, Nie P‡, Wang Y‡, Wang HW, Li HY, Yang ZL, Liu YZ§, Ren J§, Xie Z§. RPFdb: a database for genome wide information of translated mRNA generated from ribosome profiling. Nucleic Acids Research. 2016 Jan 4;44(D1):D254-8. (IF=14.9, JCR Q1)

  6. Ao L, Yan HD, Zheng TT, Wang HW, Tong MS, Guan QZ, Li XY, Cai H, Li MY, Guo Z§. Identification of reproducible drug-resistance-related dysregulated genes in small-scale cancer cell line experiments. Scientific Reports. 2015 Jul 15:5:11895. (IF=4.6, JCR Q2)

  7. Jin NN‡, Wu H‡, Miao ZQ‡, Huang Y‡, Hu YF, Bi XM, Wu D, Qian K, Wang LQ, Wang CL, Wang HW§, Li KN§, Li X§, Wang D§. Network-based survival-associated module biomarker and its crosstalk with cell death genes in ovarian cancer. Scientific Reports. 2015 Jun 23:5:11566. (IF=4.6, JCR Q2)

  8. Wang HW, Sun Q, Zhao WY, Qi LS, Gu YY, Li PF, Zhang MM, Li Y, Liu SL§, Guo Z§. Individual-level analysis of differential expression of genes and pathways for personalized medicine. Bioinformatics. 2015 Jan 1;31(1):62-8. (IF=5.8, JCR Q1)

  9. Qi LS, Li BL, Dong Y, Xu H, Chen LB, Wang HW, Li PF, Zhao WY, Gu YY, Wang CG§, Guo Z§. Deconvolution of the gene expression profiles of valuable banked blood specimens for studying the prognostic values of altered peripheral immune cell proportions in cancer patients. PLoS One. 2014 Jun 24;9(6):e100934. (IF=3.7, JCR Q2)

  10. Li KN‡, Wu D‡, Chen X‡, Zhang T, Zhang L, Yi Y, Miao ZQ, Jin NN, Bi XM, Wang HW§, Xu JZ§, Wang D§. Current and emerging biomarkers of cell death in human disease. BioMed Research International. 2014:2014:690103.

  11. Zhao WY, Qi LS, Qin Y, Wang HW, Chen BB, Wang RP, Gu YY, Liu CY, Wang CG§, Guo Z§. Functional comparison between genes dysregulated in ulcerative colitis and colorectal carcinoma. PLoS One. 2013 Aug 22;8(8):e71989. (IF=3.7, JCR Q2)

  12. Gu YY§, Wang HW, Qin Y, Zhang YJ, Zhao WY, Qi LS, Zhang YN, Wang CG, Guo Z§. Network analysis of genomic alteration profiles reveals co-altered functional modules and driver genes for glioblastoma. Molecular BioSystems. 2013 Mar;9(3):467-77. (IF=2.9, JCR Q3)

  13. Wang D, Cheng LX, Zhang YN, Wu RH, Wang MY, Gu YY, Zhao WY, Li PF, Li B, Zhang YJ, Wang HW, Huang Y, Wang CG, Guo Z§. Extensive up-regulation of gene expression in cancer: the normalised use of microarray data. Molecular BioSystems. 2012 Mar;8(3):818-27. (IF=2.9, JCR Q3)

  14. Gong X§, Wu RH§, Wang HW, Guo XW, Wang D, Gu YY, Zhang YN, Zhao WY, Cheng LX, Wang CG§, Guo Z§. Evaluating the consistency of differential expression of microRNA detected in human cancers. Molecular Cancer Therapeutics. 2011 May;10(5):752-60. (IF=5.7, JCR Q2)